Human Cell Atlas Preview Datasets
The first single-cell sequencing datasets from the Human Cell Atlas are now available to the
Census of Immune Cells1
Profiling of immunocytes by single cell RNA-seq for understanding human health and
Ischaemic Sensitivity of Human Tissue2
Assessment of ischaemic sensitivity of human spleen tissue by single cell RNA-seq.
Melanoma Infiltration of Stromal and Immune Cells3
Single cell RNA-seq of CD45+ and CD45- cells isolated from tumour and lymph nodes of
a mouse model of melanoma.
All Preview Datasets include primary data (fastq and metadata). Additional
analysis of the Preview Datasets will be made available here as donated by the data generators.
Download Instructions for Project Data
1. Install the HCA Command Line Interface (HCA CLI)
The HCA CLI is used to download the data files listed in the project's file manifest. Install the HCA CLI by following the HCA CLI installation instructions.
2. Obtain the preview project's file manifest
Follow any of the "Project Data File Manifest" links above to select the desired project in the HCA Data Browser. In the Data Browser, select the "Request File Manifest" button, then select the desired file types and generate and download the project's file manifest.
3. Use the HCA CLI to download the files listed in the project's file manifest
With the HCA CLI installed, and the project's file manifest downloaded, use the HCA CLI to download the files listed in the project's file manifest.
If you have questions or issues to report please email firstname.lastname@example.org.
- Census of Immune Cells - Contributors: Bo Li, Monika S Kowalczyk, Danielle Dionne, Orr
Ashenberg, Marcin Tabaka, Timothy Tickle, Jane Lee, Karthik Shekhar, Michal Slyper, Julia
Waldman, Orit Rozenblatt-Rosen, Aviv Regev. Collaborating organisations: Broad Institute,
Massachusetts Institute of Technology, Howard Hughes Medical Institute.
- Ischaemic Sensitivity of Human Tissue - Contributors: Phillipa Harding, Anna Wilbrey-Clark,
Krzysztof Polanski, Kevin Loudon, John R Ferdinand, Krishnaa Mahbubani, Nikitas
Georgakopoulos, Kourosh Saeb-Parsy, Kerstin Meyer, Mike Stubbington. Collaborating
organisations: Wellcome Trust Sanger Institute, University of Cambridge.
- Melanoma Infiltration of Stromal and Immune Cells - Contributors: Mirjana Efremova, Sarah
Davidson, Bidesh Mahata, Angela Riedel, Roser Vento-Tormo, Jhuma Pramanik, Gozde Kar, Jani
Huuhtanen, Jacqueline D Shields, Sarah A Teichmann. Collaborating organisations: Wellcome
Trust Sanger Institute, University of Cambridge, DKFZ German Cancer Research Center,
EMBL-EBI, University of Helsinki.
The mosaic circle is a trademark of the Human Cell Atlas consortium, registered by Broad
Institute and used with permission.